Upgrade the OpenXE system. NOTE: The upgrade system is for use in LINUX only and needs to have git installed. 1. get files from git 2. run database upgrade Files in this directory: UPGRADE.md -> This file upgrade.php -> The upgrade program Files in the data subdirectory: .in_progress.flag -> if this file exists, an upgrade is in progress, system will be locked db_schema.json -> Contains the nominal database structure remote.json -> Contains the git remote & branch which should be used for upgrade